Skip to content

Pull requests: nf-core/tools

New pull request New
47 Open 2,718 Closed
47 Open 2,718 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Configbuilder: Add serial library
#4110 opened Mar 12, 2026 by nbtm-sh • Draft
4 tasks
template: workflow output for multiQC
#4093 opened Mar 6, 2026 by maxulysse Loading…
4 tasks
4
Fix GHA notification for AWS full tests job
#4092 opened Mar 6, 2026 by maxulysse Loading…
4 tasks
5
Update GitHub Actions (major)
#4091 opened Mar 6, 2026 by renovate bot Loading…
1 task
2
Pin dependencies
#4090 opened Mar 6, 2026 by renovate bot Loading…
1 task
3
linting: capture correct error for invalid .nf-core.yml
#4080 opened Mar 4, 2026 by mashehu Loading…
1
Update dependency textual to v8
#4078 opened Mar 4, 2026 by renovate bot Loading…
1 task
2
Fix get_wf_files to use git ls-files
#4068 opened Feb 28, 2026 by jonasscheid Loading…
1
Lock file maintenance
#4055 opened Feb 23, 2026 by renovate bot Loading…
1 task
2
add missing lint test documentation and add pre-commit check for them
#4052 opened Feb 18, 2026 by mashehu Loading…
1
linting: lint for correct syntax for compressed files in stubs
#4048 opened Feb 17, 2026 by mashehu Loading…
1
Add more ruff rules (B, PTH, RSE, SIM, C4, BLE, A)
#4034 opened Feb 11, 2026 by mashehu Loading…
5 of 10 tasks
4
Fix incompatible Docker Daemon Version in Devcontainer
#4029 opened Feb 4, 2026 by JulianFlesch • Draft
4 tasks
1
TEMPLATE: Add bioconda channel to conda setup
#3987 opened Jan 19, 2026 by maxulysse Loading…
4 tasks
4
Escape original merge branch to compile regex
#3984 opened Jan 16, 2026 by rrahn Loading…
3 of 4 tasks
1
added helpful comment for common gotcha - prefix scoping
#3982 opened Jan 15, 2026 by ammaraziz Loading…
1 of 2 tasks
1
split subworkflow/test_lint into separate files
#3965 opened Dec 10, 2025 by mashehu Loading…
1
Command to generate pipeline container config files
#3955 opened Dec 2, 2025 by mirpedrol Loading…
2 of 5 tasks
3.6.0
18
Implement wave container commands
#3954 opened Dec 2, 2025 by JulianFlesch • Draft
3 of 4 tasks
3.6.0
@ningyuxin1999
29
Configbuilder: nf-core configs create
#3949 opened Dec 1, 2025 by mirpedrol Loading…
1
1
sync: don't overwrite the defaultBranch if already set in nextflow.config
#3939 opened Nov 27, 2025 by mashehu Loading…
1
Pipeline template: New pre-commit hooks (large files, merge conflicts)
#3935 opened Nov 26, 2025 by MatthiasZepper Loading…
2 of 4 tasks
17
feat(template): trigger nf-test full run if scripts in bin modified
#3897 opened Nov 13, 2025 by prototaxites Loading…
2 of 4 tasks
3.6.0
4
simplify TEMPLATE with nf-core-utils 0.4.0
#3870 opened Nov 4, 2025 by maxulysse Loading…
4 tasks
4
TEMPLATE: add a fallback for new outputdir parameter
#3798 opened Oct 3, 2025 by mashehu Loading…
8
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.