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Configbuilder: Create Nextflow configuration serial library

Status: Open.

Enhancement

#4109 In nf-core/tools;

· nbtm-sh opened on Mar 12, 2026

Configbuilder: Queue suggestion does not behave as expected (Slurm & PBS)

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#4106 In nf-core/tools;

· nbtm-sh opened on Mar 12, 2026

Configbuilder: Add default queue detection

enhancement

Status: Open.

#4103 In nf-core/tools;

· nbtm-sh opened on Mar 11, 2026

Using strict syntax causes template to raise an error when setting boolean options on CLI

Status: Open.

#4100 In nf-core/tools;

· scwatts opened on Mar 11, 2026

Configbuilder: Add additional executor and container info fields to infrastructure config

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4099 In nf-core/tools;

· mgeaghan opened on Mar 11, 2026

Configbuilder: _detect_module_system() and _get_container_systems() don't work as expected.

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#4098 In nf-core/tools;

· mgeaghan opened on Mar 11, 2026

Allow aliasing of git remotes with short names

enhancement

Status: Open.

#4096 In nf-core/tools;

· prototaxites opened on Mar 6, 2026

Configbuilder: Automated process detection

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4089 In nf-core/tools;

· mgeaghan opened on Mar 5, 2026

Configbuilder: refactor & clean up code

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4088 In nf-core/tools;

· mgeaghan opened on Mar 5, 2026

Configbuilder: testing automated infrastructure system detection

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4087 In nf-core/tools;

· mgeaghan opened on Mar 5, 2026

Configbuilder: exporting infrastructure config file

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4086 In nf-core/tools;

· mgeaghan opened on Mar 5, 2026

Configbuilder: validating user input for infrastructure configs

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

Status: Open.

Task

#4085 In nf-core/tools;

· mgeaghan opened on Mar 5, 2026