Skip to content
#

hpc-workflow

Here are 5 public repositories matching this topic...

Language: All
Filter by language

A modular, contract‑driven, SLURM‑compatible HPC pipeline for adapter removal and quality trimming of paired‑end FASTQ sequencing data using BBDUK or Trimmomatic, featuring explicit execution ABI, strict preflight validation, and restart‑safe per‑sample processing.

  • Updated May 14, 2026
  • Shell

Automates hermetic environments (macOS/HPC) to eliminate drift. Provisions offline RAG (Gemma 2), compiles LaTeX manuscripts, and indexes local knowledge. Unifies infrastructure, writing, and inference into a single, audit-ready artifact.

  • Updated Mar 30, 2026
  • Python

Improve this page

Add a description, image, and links to the hpc-workflow topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the hpc-workflow topic, visit your repo's landing page and select "manage topics."

Learn more