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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 267

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 496 111

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 403 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 411 76

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 345 45

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 205 16

Repositories

Showing 10 of 255 repositories
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Apr 23, 2026
  • scib Public

    Benchmarking analysis of data integration tools

    theislab/scib’s past year of commit activity
    Python 411 MIT 76 38 9 Updated Apr 23, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 9 Apache-2.0 6 7 1 Updated Apr 23, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 63 BSD-3-Clause 5 4 2 Updated Apr 23, 2026
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 149 GPL-3.0 19 13 0 Updated Apr 22, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 25 MIT 3 0 0 Updated Apr 21, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 345 Apache-2.0 45 20 4 Updated Apr 21, 2026
  • archmap_data Public
    theislab/archmap_data’s past year of commit activity
    Python 1 0 1 1 Updated Apr 21, 2026
  • scRatio Public
    theislab/scRatio’s past year of commit activity
    Jupyter Notebook 4 Apache-2.0 0 0 0 Updated Apr 21, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 5 4 0 Updated Apr 20, 2026
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