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1. Sage-Bionetworks/Genie Sage-Bionetworks/Genie Public

   Validation and processing of GENIE files

   Python 15 10

2. Sage-Bionetworks/recover Sage-Bionetworks/recover Public

   A data pipeline for processing data from the RECOVER project.

   Python 5 1

3. Sage-Bionetworks-Workflows/nf-genie Sage-Bionetworks-Workflows/nf-genie Public

   Nextflow workflow for main GENIE processing

   Jupyter Notebook 3 2

4. Sage-Bionetworks/iatlas-cbioportal-export Sage-Bionetworks/iatlas-cbioportal-export Public

   ETL pipeline for processing and exporting iAtlas files to be cBioportal ingestion ready

   Python 1

5. Sage-Bionetworks-Workflows/orca-recipes Sage-Bionetworks-Workflows/orca-recipes Public

   Open-source airflow deployment and production DAGs for the DPE team

   Python 1 1

6. snsa-tools snsa-tools Public

   Repository containing basic tools to analyze nuclear spectra (mainly spe files of a specific format from Maestro)

   Python 1