Update version constraints

scripts/create_resources/test_resources.sh

@@ -18,7 +18,10 @@ DATASET_ID=mouse_brain_combined
 RAW_DATA=resources_test/common
 DATASET_DIR=resources_test/task_spatial_segmentation/$DATASET_ID
 
-mkdir -p $DATASET_DIR
+if [ -d "$DATASET_DIR" ]; then
+  rm -rf "$DATASET_DIR"
+fi
+mkdir -p "$DATASET_DIR"
 
 # process dataset
 viash run src/data_processors/process_dataset/config.vsh.yaml -- \
@@ -66,5 +69,6 @@ HERE
 
 # only run this if you have access to the openproblems-data bucket
 aws s3 sync --profile op \
-  "$DATASET_DIR" s3://openproblems-data/resources_test/task_spatial_segmentation/mouse_brain_combined/ \
+  resources_test/task_spatial_segmentation/mouse_brain_combined/ \
+  s3://openproblems-data/resources_test/task_spatial_segmentation/mouse_brain_combined/ \
   --delete --dryrun

src/api/comp_data_processor.yaml

@@ -56,9 +56,8 @@ argument_groups:
         type: string
         description: Bibtex reference of the paper in which the dataset was published.
         required: true
-        multiple: true
         info:
-          test_default: ["https://example.com/mouse_brain_combined_paper", "10.1234/example.doi"]
+          test_default: "10.1234/example.doi"
       - name: --dataset_summary
         type: string
         description: Short description of the dataset.

src/base/setup_spatialdata_partial.yaml

@@ -1,5 +1,3 @@
 setup:
   - type: python
-    # spatialdata>=0.7.3a1 is required as a workaround for a bug in spatialdata<=0.7.2
-    # See: https://github.com/scverse/spatialdata/issues/1090
-    pypi: ["spatialdata>=0.7.3a1", "anndata>=0.12.0", "zarr>=3.0.0"]
+    pypi: ["spatialdata>=0.7.3", "anndata>=0.12.0", "zarr>=3.0.0"]