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Pull requests: nf-core/raredisease

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Pull requests list

fix: sort BAM/BAI inputs to Manta for deterministic sample order
#815 opened Apr 18, 2026 by benstory Loading…
6 of 12 tasks
1
Add support for variant scoring by MIVMIR, GICAM models
#812 opened Apr 16, 2026 by torbjorgen Loading…
10 of 13 tasks
3
fix(call_snv): swap ch_genome_fasta and ch_genome_fai argument order in CALL_SNV_SENTIEON
#811 opened Apr 15, 2026 by ktruve Loading…
2
Add annotate_cadd subworkflow test
#794 opened Mar 24, 2026 by peterpru Member • Draft
12 tasks
@peterpru
2
Add GATK contamination check to complement VerifyBamID2
#758 opened Dec 15, 2025 by dorotejavujinovic Loading…
5 of 8 tasks
8
Add Parabricks DeepVariant module
#724 opened Sep 19, 2025 by HudoGriz Loading…
3 of 12 tasks
3
Deepvariant subworkflow (issue #614)
#651 opened Dec 6, 2024 by fa2k Contributor • Draft
7 tasks done
9
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