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ingest/extract_open_data: Do not compress intermediate files #344

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Merged
joverlee521 merged 1 commit into from
Nov 13, 2025
Merged

ingest/extract_open_data: Do not compress intermediate files #344

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4 changes: 2 additions & 2 deletions ingest/Snakefile
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Original file line number Diff line number Diff line change
Expand Up @@ -48,8 +48,8 @@ rule extract_open_data:
metadata="results/metadata.tsv",
sequences="results/sequences.fasta",
output:
metadata="results/metadata_open.tsv.zst",
sequences="results/sequences_open.fasta.zst",
metadata="results/metadata_open.tsv",
sequences="results/sequences_open.fasta",
shell:
"""
augur filter --metadata {input.metadata} \
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4 changes: 2 additions & 2 deletions ingest/build-configs/nextstrain-automation/config.yaml
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Expand Up @@ -22,8 +22,8 @@ upload:
alignment_with_restricted.fasta.zst: results/alignment.fasta
translations_with_restricted.zip: results/translations.zip

metadata.tsv.zst: results/metadata_open.tsv.zst
sequences.fasta.zst: results/sequences_open.fasta.zst
metadata.tsv.zst: results/metadata_open.tsv
sequences.fasta.zst: results/sequences_open.fasta

cloudfront_domain: 'data.nextstrain.org'

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