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@harvardinformatics

Harvard Informatics

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  1. learning-bioinformatics-at-home learning-bioinformatics-at-home Public

    resources for learning bioinformatics

    1.4k 240

  2. JAuth JAuth Public

    Java GUI client to generate Google authentication codes

    Java 202 51

  3. bioinformatics-coffee-hour bioinformatics-coffee-hour Public

    Short lessons from FAS Informatics coffee hour

    HTML 155 50

  4. ATAC-seq ATAC-seq Public

    Python 145 43

  5. snparcher snparcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    Python 89 35

  6. GenomeAnnotation GenomeAnnotation Public

    Best practices and workflow for genome annotation

    Python 79 14

Repositories

Showing 10 of 181 repositories
  • ifxvue Public

    Harvard FAS Informatics Vue JS components

    harvardinformatics/ifxvue’s past year of commit activity
    Vue 0 GPL-2.0 0 0 11 Updated Mar 17, 2026
  • biotips Public

    The unix tips and tricks for bioinformatics workshop

    harvardinformatics/biotips’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 17, 2026
  • scRNAseqClusterBootstrap Public

    Bootstrap resampling of scRNA-seq datasets to evaluate cluster stability

    harvardinformatics/scRNAseqClusterBootstrap’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 17, 2026
  • snparcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    harvardinformatics/snparcher’s past year of commit activity
    Python 89 MIT 35 7 1 Updated Mar 13, 2026
  • informatics-website Public

    FAS Informatics website

    harvardinformatics/informatics-website’s past year of commit activity
    TeX 2 MIT 2 1 0 Updated Mar 13, 2026
  • short-trainings Public

    Material for our various standalone short trainings (a potpourri, if you will)

    harvardinformatics/short-trainings’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 13, 2026
  • github-intro Public

    A hands-on introduction to git/github

    harvardinformatics/github-intro’s past year of commit activity
    1 MIT 16 0 3 Updated Mar 11, 2026
  • AnnotationRNAseqAssembly Public

    Snakemake workflow for assembling transcript models from RNA-seq reads

    harvardinformatics/AnnotationRNAseqAssembly’s past year of commit activity
    Python 3 0 0 0 Updated Mar 6, 2026
  • cannon-snakemake-cfg Public

    Config and scripts for Snakemake's automatic partition selection on Cannon

    harvardinformatics/cannon-snakemake-cfg’s past year of commit activity
    Python 0 0 0 0 Updated Mar 4, 2026
  • specify_rapid Public

    Rapid data upload tool for specify. Conversion from SVN.

    harvardinformatics/specify_rapid’s past year of commit activity
    JavaScript 1 0 0 3 Updated Feb 28, 2026

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