merge PR #8 changes and other fixes

[gsalkuin]

This closes PR #8.

[Copilot]

Pull request overview

This PR merges and consolidates the prior “corotational” BPM bond work (PR #8) into bond_style bpm/rotational, adding new runtime options for rotational reference frame and damping construction, plus updated documentation and a new example input.

Changes:

• Extend bpm/rotational with selectable frame (average vs particle) and damping (derivative vs dem) modes and update restart I/O accordingly.
• Remove the separate bpm/corotational bond style implementation files.
• Add a new BPM wire example and update the bond_style bpm/rotational documentation to describe the new keywords and theory.

Reviewed changes

Copilot reviewed 6 out of 7 changed files in this pull request and generated 5 comments.

Show a summary per file

File	Description
src/BPM/bond_bpm_rotational.h	Updates the rotational bond style interface to support new frame/damping modes and revised history variables.
src/BPM/bond_bpm_rotational.cpp	Implements average-frame formulation + derivative damping, adds on-the-fly bond history initialization, and updates coeff/settings/restart handling.
src/BPM/bond_bpm_corotational.h	Removes the separate corotational bond style interface.
src/BPM/bond_bpm_corotational.cpp	Removes the separate corotational bond style implementation.
examples/bpm/wires/in.bpm.wires	Adds an example input demonstrating thin/coiled wire behavior with bpm/rotational.
doc/src/bond_bpm_rotational.rst	Documents new frame/damping keywords, updates equations/notation, and adds a new reference.

[jtclemm]

Few more clean ups here from copilot: jtclemm@99e974c I think that covers everything it said that was correct.

Not sure how to add to this PR, but can just create another PR later.

[gsalkuin]

Few more clean ups here from copilot: jtclemm@99e974c I think that covers everything it said that was correct.

Not sure how to add to this PR, but can just create another PR later.

Thanks, I fetched it from your repo. I also gave you access to mine.