Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 722 397

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 411 100

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 349 89

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 260 152

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 157 97

  6. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 148 52

Repositories

Showing 10 of 227 repositories
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl’s past year of commit activity
    TypeScript 9 Apache-2.0 1 6 3 Updated Apr 22, 2026
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 131 MIT 17 124 (1 issue needs help) 16 Updated Apr 22, 2026
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft’s past year of commit activity
    C++ 411 100 42 (3 issues need help) 8 Updated Apr 22, 2026
  • walnuts Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnuts’s past year of commit activity
    C++ 42 MIT 2 9 (1 issue needs help) 2 Updated Apr 22, 2026
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 19 Apache-2.0 3 1 0 Updated Apr 22, 2026
  • dmk Public

    A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution

    flatironinstitute/dmk’s past year of commit activity
    C++ 22 Apache-2.0 5 13 (1 issue needs help) 3 Updated Apr 22, 2026
  • c2py Public

    Clair/c2py low level library

    flatironinstitute/c2py’s past year of commit activity
    C++ 6 Apache-2.0 1 0 0 Updated Apr 22, 2026
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 15 GPL-3.0 3 5 1 Updated Apr 21, 2026
  • adapol Public

    Adaptive Pole Fitting for Quantum Many-Body Physics

    flatironinstitute/adapol’s past year of commit activity
    Jupyter Notebook 13 GPL-3.0 4 1 0 Updated Apr 21, 2026
  • masala_public Public

    The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.

    flatironinstitute/masala_public’s past year of commit activity
    C++ 9 AGPL-3.0 1 1 0 Updated Apr 20, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…