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Changes to allow containerization #13

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f51ab78
updated VCFReader and added dockerfile
srynobio Nov 15, 2018
e37aa88
updated dockerfile
srynobio Nov 15, 2018
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21 changes: 21 additions & 0 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
FROM ubuntu:latest
MAINTAINER dillonl https://github.com/dillonl

LABEL vender="dillonl"

RUN apt-get update && apt-get -y install \
cmake \
git \
gcc \
build-essential \
python-dev \
libpng-dev

## Pull repo
RUN git clone https://github.com/srynobio/graphite.git
RUN mkdir graphite/bin
RUN cd graphite/bin && cmake ../
RUN cd graphite/bin && make
RUN cp graphite/bin/graphite /usr/bin/
RUN graphite -h

2 changes: 1 addition & 1 deletion core/vcf/VCFReader.h
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Expand Up @@ -34,7 +34,7 @@ namespace graphite

inline bool getNextLine(std::string& line)
{
return std::getline(*this->m_file_stream_ptr, line);
return (bool)std::getline(*this->m_file_stream_ptr, line);
}

Variant::SharedPtr m_preloaded_variant;
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