3 changes#6
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chrisgulvik wants to merge 8 commits intoappliedbinf:masterfrom
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chrisgulvik
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Dec 10, 2019
chrisgulvik
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- updated readme
- changed python shebang line and reorganized module names
- changed analysis.errors print statement
…ate std lib from externals; updated version
…of abspath to handle symlinks, allow ~ input with expanduser, use path.join for nonsystem call var assignments, cleaned extra spaces on empty lines
…, use and handle None args especially with paths, add filesize requirement >0 for validate_file() to return True, avoid shutil.which for py2 compatibility, use validate_utility() and validate_file() when possible, guppy --device default auto, clarify --genome-size infmt requirement, print analysis.errors as separate lines not as unformatted python list on screen, remove space before colons
… --list-organisms not implemented yet
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