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4 changes: 4 additions & 0 deletions bio-research/.mcp.json
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Expand Up @@ -12,6 +12,10 @@
"type": "http",
"url": "https://mcp.deepsense.ai/biorxiv/mcp"
},
"bgpt": {
"type": "sse",
"url": "https://bgpt.pro/mcp/sse"
},
"c-trials": {
"type": "http",
"url": "https://mcp.deepsense.ai/clinical_trials/mcp"
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6 changes: 5 additions & 1 deletion bio-research/CONNECTORS.md
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Expand Up @@ -10,7 +10,7 @@ Plugins are **tool-agnostic** — they describe workflows in terms of categories

| Category | Placeholder | Included servers | Other options |
|----------|-------------|-----------------|---------------|
| Literature | `~~literature` | PubMed, bioRxiv | Google Scholar, Semantic Scholar |
| Literature | `~~literature` | PubMed, bioRxiv, BGPT | Google Scholar, Semantic Scholar |
| Scientific illustration | `~~scientific illustration` | BioRender | — |
| Clinical trials | `~~clinical trials` | ClinicalTrials.gov | EU Clinical Trials Register |
| Chemical database | `~~chemical database` | ChEMBL | PubChem, DrugBank |
Expand All @@ -21,3 +21,7 @@ Plugins are **tool-agnostic** — they describe workflows in terms of categories
| Lab platform | `~~lab platform` | Benchling\* | — |

\* Placeholder — MCP URL not yet configured

## Notes

- **BGPT** uses SSE transport (`"type": "sse"`) rather than streamable HTTP. It provides structured experimental data extracted from full-text papers, including methods, results, sample sizes, quality scores, and conclusions — complementing PubMed and bioRxiv's standard metadata. Free tier: 50 searches per network, no API key required. See [bgpt.pro/mcp](https://bgpt.pro/mcp) or [github.com/connerlambden/bgpt-mcp](https://github.com/connerlambden/bgpt-mcp).
3 changes: 2 additions & 1 deletion bio-research/README.md
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Expand Up @@ -2,7 +2,7 @@

Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D. Use with [Cowork](https://claude.com/product/cowork) or install directly in Claude Code.

This plugin consolidates 10 MCP server integrations and 5 analysis skills into a single package for life science researchers.
This plugin consolidates 11 MCP server integrations and 5 analysis skills into a single package for life science researchers.

## What's Included

Expand All @@ -14,6 +14,7 @@ This plugin consolidates 10 MCP server integrations and 5 analysis skills into a
|----------|-------------|---------------------|
| U.S. National Library of Medicine | Search biomedical literature and research articles | `~~literature` |
| deepsense.ai | Access preprints from bioRxiv and medRxiv | `~~literature` |
| BGPT | Search scientific papers for structured experimental data (methods, results, quality scores) | `~~literature` |
| John Wiley & Sons | Access academic research and publications | `~~journal access` |
| Sage Bionetworks | Collaborative research data management | `~~data repository` |
| deepsense.ai | Bioactive drug-like compound database | `~~chemical database` |
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1 change: 1 addition & 0 deletions bio-research/commands/start.md
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Expand Up @@ -27,6 +27,7 @@ Test which MCP servers are connected by listing available tools. Group the resul
**Literature & Data Sources:**
- ~~literature database — biomedical literature search
- ~~literature database — preprint access (biology and medicine)
- ~~literature database — structured experimental data from full-text papers (BGPT)
- ~~journal access — academic publications
- ~~data repository — collaborative research data (Sage Bionetworks)

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