Bump the uv group across 1 directory with 3 updates

[dependabot]

Bumps the uv group with 3 updates in the / directory: bioio-ome-zarr, jupyterlab and jupyterlab-code-formatter.

Updates bioio-ome-zarr from 3.2.1 to 3.2.2

Release notes

Sourced from bioio-ome-zarr's releases.

v3.2.2

What's Changed

• use fs.unstrip_protocol by @​joshua-gould in bioio-devs/bioio-ome-zarr#130
• Read channels no color by @​joshua-gould in bioio-devs/bioio-ome-zarr#129

Full Changelog: bioio-devs/bioio-ome-zarr@v3.2.1...v3.2.2

Commits

• 2607802 Merge pull request #129 from joshua-gould/read_channels_no_color
• cfd4742 Merge branch 'main' into read_channels_no_color
• 20667a6 Merge pull request #130 from joshua-gould/fs-protocol
• 9ece556 use fs.unstrip_protocol instead of checking for s3 file system as fsspec.url_...
• 5a7a1e6 Fix reading channels without colors
• f70bce4 Fix reading channels without colors
• 636cfe1 import numpy as np
• See full diff in compare view

Updates jupyterlab from 4.5.3 to 4.5.4

Release notes

Sourced from jupyterlab's releases.

v4.5.4

4.5.4

(Full Changelog)

Bugs fixed

• Avoid using system clipboard in Notebook widget #18474 (@​brichet)
• Update CodeMirror versions, fixing a few selection issues #18466 (@​krassowski)
• Fix debugger variable panel to render value 0 properly #18464 (@​itsmevichu)
• Consider both the content type and pattern match in DocumentRegistry.getFileTypeForModel() #18409 (@​krassowski)
• false in saveAs to avoid fetching file body #18379 (@​DeborahOlaboye)

Maintenance and upkeep improvements

• Bump Lumino packages to the 2026.2.5 release, fixing iframe resizing #18440 (@​jasongrout)

Documentation improvements

• Clarify notebook and cell metadata API changes in JupyterLab 4 #18304 (@​Krish-876)
• Document a change in the Code Editor source updates via sharedModel in JupyterLab 4 #18260 (@​Krish-876)
• Fix Contents API fetch documentation of the content default #18383 (@​ceasermikes002)
• Add AI rules #18322 (@​jtpio)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​brichet (activity) | @​ceasermikes002 (activity) | @​DeborahOlaboye (activity) | @​itsmevichu (activity) | @​jasongrout (activity) | @​jtpio (activity) | @​krassowski (activity) | @​Krish-876 (activity)

Commits

• 2ecc1ee [ci skip] Publish 4.5.4
• 19f81fc Backport PR #18474 on branch 4.5.x (Avoid using system clipboard in Notebook ...
• b82e6d7 Backport PR #18466 on branch 4.5.x (Update CodeMirror versions, fixing a few ...
• c70c36e Backport PR #18440 on branch 4.5.x (Bump Lumino packages to the 2026.2.5 rele...
• 23b9ff5 Backport PR #18464 on branch 4.5.x (Fix debugger variable panel to render val...
• 553d941 Backport PR #18409 on branch 4.5.x (Consider both the content type and patter...
• d8acd39 Backport PR #18304 on branch 4.5.x (Clarify notebook and cell metadata API ch...
• e021969 Backport PR #18260 on branch 4.5.x (Document a change in the Code Editor sour...
• dc39ba5 Backport PR #18383 on branch 4.5.x (Fix Contents API fetch documentation of t...
• fd57db9 Backport PR #18322: Add AI rules (#18395)
• Additional commits viewable in compare view

Updates jupyterlab-code-formatter from 3.0.2 to 3.0.3

Release notes

Sourced from jupyterlab-code-formatter's releases.

v3.0.3

3.0.3

(Full Changelog)

Maintenance and upkeep improvements

• Update snapshots bot checkout and permission check #373 (@​martinRenou, @​krassowski)

Other merged PRs

• Drop NPM_TOKEN for trusted publishers setup #374 (@​krassowski, @​AA-Turner)
• feat: improve isort configurability #370 (@​lucas-bremond, @​AA-Turner, @​krassowski)
• ruff format: don't pass -q #368 (@​nelhage, @​AA-Turner, @​Hnasar, @​krassowski)
• Fix SyntaxWarning by using a raw string in the regex pattern #366 (@​tsvikas, @​krassowski, @​shreve)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​AA-Turner (activity) | @​Hnasar (activity) | @​krassowski (activity) | @​lucas-bremond (activity) | @​martinRenou (activity) | @​nelhage (activity) | @​shreve (activity) | @​tsvikas (activity)

Changelog

Sourced from jupyterlab-code-formatter's changelog.

3.0.3

(Full Changelog)

Maintenance and upkeep improvements

• Update snapshots bot checkout and permission check #373 (@​martinRenou, @​krassowski)

Other merged PRs

• Drop NPM_TOKEN for trusted publishers setup #374 (@​krassowski, @​AA-Turner)
• feat: improve isort configurability #370 (@​lucas-bremond, @​AA-Turner, @​krassowski)
• ruff format: don't pass -q #368 (@​nelhage, @​AA-Turner, @​Hnasar, @​krassowski)
• Fix SyntaxWarning by using a raw string in the regex pattern #366 (@​tsvikas, @​krassowski, @​shreve)

Contributors to this release

The following people contributed discussions, new ideas, code and documentation contributions, and review. See our definition of contributors.

(GitHub contributors page for this release)

@​AA-Turner (activity) | @​Hnasar (activity) | @​krassowski (activity) | @​lucas-bremond (activity) | @​martinRenou (activity) | @​nelhage (activity) | @​shreve (activity) | @​tsvikas (activity)

Commits

• 37119c1 Publish 3.0.3
• 2ba87d6 Drop NPM_TOKEN for trusted publishers setup (#374)
• b15e1a8 feat: improve isort configurability (#370)
• 3f042ec ruff format: don't pass -q (#368)
• fb54795 Update snapshots bot checkout and permission check (#373)
• 9d6e41e Fix SyntaxWarning by using a raw string in the regex pattern (#366)
• See full diff in compare view

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