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betydata R data package with BETYdb public data export#12

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divine7022 wants to merge 23 commits intomainfrom
mvp-betydata
Open

betydata R data package with BETYdb public data export#12
divine7022 wants to merge 23 commits intomainfrom
mvp-betydata

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Summary

Initial release of betydata, an R data package providing offline access to
public data from BETYdb

  • 16 datasets: traitsview (43,532 rows) + 15 reference tables
  • Multiple formats: .rda (lazy-loaded), Parquet, Frictionless datapackage.json
  • Filtered to public data only (access_level = 4, checked >= 0)
  • Complete roxygen2 documentation for all datasets
  • Package-level documentation with BETYdb context
  • Data quality policy in README (checked column, access levels)

Vignettes

  • orientation: Package overview and data relationships
  • sql-analogs: Migrate BETYdb SQL queries to dplyr
  • pfts-priors: Working with PFTs and Bayesian priors
  • manuscript: Reproduce LeBauer et al. (2018) analyses

Datasets

Dataset Description
traitsview Primary trait/yield observations (43,532 × 36)
species Plant taxonomy
sites Research site locations
variables Trait definitions and units
citations Literature references
pfts Plant functional types
priors Bayesian prior distributions
+ 9 more Support and relationship tables

implements #1, #2, #3, #4, #5, #6, #7, #8, #9, #10, #11

@divine7022 divine7022 requested a review from dlebauer February 11, 2026 21:13
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