index.md

Datastructure documentation

Welcome

Welcome to the documentation of data storage/processing of the Optophysiology lab in Freiburg. This documentation is meant for internal use.

Want to contribute to this amazing document ? please read the contribution guide.

First steps for datastructure_tools

Code Basics

• Introduction to python
• Using git and GitHub for version control
• Virtual environments and conda

How-to fuer alle Lebenslagen

• Create an animal
• Create a virus
• Surgery
• Water deprivation
• Behavioral Experiment
• Perfusion
• Create a general animalsheet entry
• Add new TVA
• AnimalSheet Documentation

How-to for datastructure_tools GUIs

How-to of individual tools:

• AdminCommander
• AnimalCommander
• EquipmentCommander
• FileCommander
• SessionCommander
• SurgeryCommander
• SurgeryPlanner
• VirusCommander
• WeightCommander

How-to eLabFTW

Introduction to eLabFTW lab notebook

General how-to:

• Register or Login
• Generate Apikey
• Generate signature passphrase
• Tools for administration

Guides for individual templates:

• Behavior Exp Entry
• Perfusion Entry
• Surgery Entry
• Waterdeprivation Entry
• AnimalSheetEntry
• Animal Template
• Virus Template

Code Documentation

"Is my code fast? No. But is it well documented? No. But does it work? Also no."

Code