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EquipmentCommander

GUI for adding Ephys probes with defined electrode configuration and miniscopes (not implemented yet). You can create a specific geometric arrangement of electrodes in the probe. This can be used later for spike sorting as well as and electrode/neuron localization.

:::{note}Start From the datastructure_tools directory run

python ./EquipmentCommander.py

or from any directory

python -m datastructure_tools equipment

::: :::{error} :class: dropdown error_server.PNG

In case you get this error, no connection can be established to MySQL. Ensure you entered correct credentials first using AdminCommander. :::

Add new Probe for existing types

equipmentcommander_addprobe.png Enter a unique identifier for the probe, such as a serial number, etc. You can add any comments about this probe. Select the type of probe. If the desired type does not exist, create a new one:

Add new Probe Type

You can create a new electrode type by entering the appropriate values for the electrode arrangement, number of waves etc. You can also upload a ProbeInterface file, a library that allows you to define and visualize probe geometries. The library also allows to use the probe geometries in spikesorting.

equipmentcommander_probetype.png

Add new miniscope

Not implemented

written by: Artur
last modified: 2024-10-22