Add AI contributor skills, per-script structure, and CI pipeline#2

Merged

ypriverol merged 16 commits intomainfrom

add/ai-contributor-skills

Mar 24, 2026

Commits on Mar 24, 2026

Add design spec for AI contributor skills and validation pipeline

timosachsenberg
and
claude
committed
Address spec review feedback: clarify imports, migration, conftest template

timosachsenberg
and
claude
committed
Add implementation plan for AI contributor skills and validation pipeline

timosachsenberg
and
claude
committed
Add ruff.toml with E/F/W/I rule set, line-length 120

timosachsenberg
and
claude
committed
Migrate peptide_mass_calculator to per-script directory structure

timosachsenberg
and
claude
committed
Migrate protein_digest to per-script directory structure

timosachsenberg
and
claude
committed
Migrate spectrum_file_info to per-script directory with synthetic test data

timosachsenberg
and
claude
committed
Migrate feature_detection_proteomics to per-script directory with synthetic test data

timosachsenberg
and
claude
committed
Migrate mass_accuracy_calculator to per-script directory structure

timosachsenberg
and
claude
committed
Migrate isotope_pattern_matcher to per-script directory structure

timosachsenberg
and
claude
committed
Migrate metabolite_feature_detection to per-script directory with synthetic test data

timosachsenberg
and
claude
committed
Add validate-script and contribute-script Claude Code skills

timosachsenberg
and
claude
committed
Add AGENTS.md platform-agnostic AI contributor guide

timosachsenberg
and
claude
committed
Add GitHub Actions CI workflow for per-script isolated validation

timosachsenberg
and
claude
committed
Update CLAUDE.md and README.md for per-script directory structure

timosachsenberg
and
claude
committed
Fix review findings: add bulk-test command, fix algorithm name in README

timosachsenberg
and
claude
committed

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Add AI contributor skills, per-script structure, and CI pipeline#2

Add AI contributor skills, per-script structure, and CI pipeline#2
ypriverol merged 16 commits intomainfrom
add/ai-contributor-skills

Commits on Mar 24, 2026

Add design spec for AI contributor skills and validation pipeline

Address spec review feedback: clarify imports, migration, conftest template

Add implementation plan for AI contributor skills and validation pipeline

Add ruff.toml with E/F/W/I rule set, line-length 120

Migrate peptide_mass_calculator to per-script directory structure

Migrate protein_digest to per-script directory structure

Migrate spectrum_file_info to per-script directory with synthetic test data

Migrate feature_detection_proteomics to per-script directory with synthetic test data

Migrate mass_accuracy_calculator to per-script directory structure

Migrate isotope_pattern_matcher to per-script directory structure

Migrate metabolite_feature_detection to per-script directory with synthetic test data

Add validate-script and contribute-script Claude Code skills

Add AGENTS.md platform-agnostic AI contributor guide

Add GitHub Actions CI workflow for per-script isolated validation

Update CLAUDE.md and README.md for per-script directory structure

Fix review findings: add bulk-test command, fix algorithm name in README