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@NW-PaGe

The Northwest Pathogen Genomics Center of Excellence

Welcome! 👋

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🙋‍♀️ This is the Github Org for the Northwest Pathogen Genomics Center of Excellence.

🌈 Please review the contributing guides for details on how to contribute to a project

👩‍💻 Check out our website! https://nwpage.org/

🍿 Fun facts - what does your team eat for breakfast?

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  1. vaper vaper Public

    Viral (meta)-genome assembly pipeline.

    Nextflow 23 2

  2. epitome epitome Public

    Pipeline for creating comprehensive viral reference sets.

    Python 12

  3. covid_seq_elr covid_seq_elr Public

    Summarize and share COVID-19 Sequencing Metadata ELR data flow at the Washington State Department of Health

    R 3

  4. CorgiSNPs CorgiSNPs Public

    Fungal core genome analysis

    Standard ML 3 3

  5. lineage_classifications lineage_classifications Public

    The lineage_classifications.csv file is maintained by the WA DOH Molecular Epidemiology Program in order to group the lineages for the Sequencing & Variants Report.

    R 2

  6. wadoh_raccoon wadoh_raccoon Public

    Python package for transforming and linking pathogen sequencing/subtyping metadata

    Python 2

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