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@MSDLLCpapers

MSD Inventing for Life

This GitHub's main purpose is to house open source code repositories published by MSD for public use ,research, and for publications outside the United States

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  1. ovo ovo Public

    OVO, an open-source ecosystem for de novo protein design

    Python 111 20

  2. obsidian obsidian Public

    Algorithmic process optimization and AI experiment design

    Python 44 8

  3. promb promb Public

    Humanness of de-novo designed proteins

    Jupyter Notebook 39 6

  4. AbMelt AbMelt Public

    Python 26 8

  5. dedenser dedenser Public

    A Python tool for creating and downsampling chemical pointclouds.

    Python 13 2

  6. teal-agents teal-agents Public

    Python 10 10

Repositories

Showing 10 of 44 repositories
  • oncoPoS Public

    oncoPoS performs Probability of Success (PoS) calculations for a phase 3 oncology study using a Bayesian Hierarchical model. The prior in this model is based on the data observed in an earlier study, design features for the phase 3 study that is being assessed and the industry benchmark for success.

    MSDLLCpapers/oncoPoS’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Mar 3, 2026
  • ovo Public

    OVO, an open-source ecosystem for de novo protein design

    MSDLLCpapers/ovo’s past year of commit activity
    Python 111 MIT 20 9 (6 issues need help) 1 Updated Feb 25, 2026
  • helmify Public

    This project provides an overview and implementation of the work described in "HELMify: A Hybrid Rule- and LLM-Based Generator of Peptide Monomer HELM Names".

    MSDLLCpapers/helmify’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 20, 2026
  • teal-agents Public
    MSDLLCpapers/teal-agents’s past year of commit activity
    Python 10 10 0 3 Updated Feb 20, 2026
  • usevaxpmx Public
    MSDLLCpapers/usevaxpmx’s past year of commit activity
    R 2 0 0 0 Updated Feb 20, 2026
  • ovo-containers Public
    MSDLLCpapers/ovo-containers’s past year of commit activity
    Dockerfile 2 MIT 1 0 1 Updated Feb 13, 2026
  • ovo-examples Public
    MSDLLCpapers/ovo-examples’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Feb 12, 2026
  • dynamicpv Public

    Evaluate present values and cost-effectiveness with dynamic pricing and uptake

    MSDLLCpapers/dynamicpv’s past year of commit activity
    R 7 GPL-3.0 4 0 0 Updated Jan 24, 2026
  • adp Public
    MSDLLCpapers/adp’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 8, 2026
  • General-PepMNet Public

    Generalization of PepMNet to allow for non-canonical amino acids and more complex peptide topologies

    MSDLLCpapers/General-PepMNet’s past year of commit activity
    Python 0 1 0 0 Updated Jan 5, 2026
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