{2025.06}[2024a] LAMMPS v29Aug2024_update2 by laraPPr · Pull Request #1337 · EESSI/software-layer

laraPPr · 2025-12-12T15:10:45Z

No description provided.

laraPPr · 2025-12-12T15:11:03Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_n1

eessi-bot-aws · 2025-12-12T15:11:10Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_n1
Building for: aarch64/neoverse_n1
Job dir: /project/def-users/SHARED/jobs/2025.12/pr_1337/112386

date	job status	comment
Dec 12 15:11:08 UTC 2025	submitted	job id `112386` awaits release by job manager
Dec 12 15:11:49 UTC 2025	released	job awaits launch by Slurm scheduler
Dec 12 15:17:58 UTC 2025	running	job `112386` is running
Dec 12 16:15:36 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-112386.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_n1-17655559860.tar.zst` size: 44 MiB (46436578 bytes) entries: 1832 modules under 2025.06/software/linux/aarch64/neoverse_n1/modules/all `archspec/0.2.5-GCCcore-13.3.0.lua` `kim-api/2.4.1-GCC-13.3.0.lua` `MDI/1.4.26-gompi-2024a.lua` `mpi4py/4.0.1-gompi-2024a.lua` `PLUMED/2.9.3-foss-2024a.lua` `ScaFaCoS/1.0.4-foss-2024a.lua` `tbb/2021.13.0-GCCcore-13.3.0.lua` `Voro++/0.4.6-GCCcore-13.3.0.lua` `xxd/9.1.1275-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/neoverse_n1/software `archspec/0.2.5-GCCcore-13.3.0` `kim-api/2.4.1-GCC-13.3.0` `MDI/1.4.26-gompi-2024a` `mpi4py/4.0.1-gompi-2024a` `PLUMED/2.9.3-foss-2024a` `ScaFaCoS/1.0.4-foss-2024a` `tbb/2021.13.0-GCCcore-13.3.0` `Voro++/0.4.6-GCCcore-13.3.0` `xxd/9.1.1275-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/neoverse_n1/reprod `archspec/0.2.5-GCCcore-13.3.0/20251212_151907UTC` `kim-api/2.4.1-GCC-13.3.0/20251212_152142UTC` `MDI/1.4.26-gompi-2024a/20251212_152231UTC` `mpi4py/4.0.1-gompi-2024a/20251212_153657UTC` `PLUMED/2.9.3-foss-2024a/20251212_152955UTC` `ScaFaCoS/1.0.4-foss-2024a/20251212_155254UTC` `tbb/2021.13.0-GCCcore-13.3.0/20251212_154053UTC` `Voro++/0.4.6-GCCcore-13.3.0/20251212_151924UTC` `xxd/9.1.1275-GCCcore-13.3.0/20251212_152237UTC` other under 2025.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Dec 12 16:15:36 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_neoverse_n1+default P: latency: 1.94 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_neoverse_n1+default P: latency: 5.46 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_neoverse_n1+default P: latency: 0.29 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_neoverse_n1+default P: bandwidth: 15717.66 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-112386.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

easystacks/software.eessi.io/2025.06/eessi-2025.06-eb-5.1.2-2024a.yml

…24a.yml Co-authored-by: Loris Ercole <30901257+lorisercole@users.noreply.github.com>

laraPPr · 2025-12-16T12:22:20Z

We'll have to wait for the next EasyBuild release

lorisercole · 2026-01-14T15:07:01Z

We'll have to wait for the next EasyBuild release

I think it's have been released some weeks ago: easybuild-easyblocks-v5.2.0

laraPPr · 2026-01-27T15:54:25Z

bot: help

gpu-bot-ugent · 2026-01-27T15:54:29Z

Updates by the bot instance eessi-bot-vsc-ugent (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

eessi-bot-aws · 2026-01-27T15:54:29Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

eessi-bot-surf · 2026-01-27T15:54:29Z

Updates by the bot instance eessi-bot-surf (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

eessi-bot-deucalion · 2026-01-27T15:54:29Z

Updates by the bot instance eessi-bot-deucalion (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

eessi-bot-jsc · 2026-01-27T15:54:30Z

Updates by the bot instance eessi-bot-jsc (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

eessi-bot-rug · 2026-01-27T15:54:30Z

Updates by the bot instance eessi-bot-rug (click for details)

received bot command help from laraPPr
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

laraPPr · 2026-01-27T15:55:05Z

bot: show_config

eessi-bot-deucalion · 2026-01-27T15:55:11Z

Instance eessi-bot-deucalion is configured to build on:

Node type a64fx:
- OS: linux
- CPU architecture: aarch64/a64fx
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']

eessi-bot-aws · 2026-01-27T15:55:11Z

Instance eessi-bot-mc-aws is configured to build on:

Node type x86-64-generic:
- OS: linux
- CPU architecture: x86_64/generic
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-haswell:
- OS: linux
- CPU architecture: x86_64/intel/haswell
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-sapphirerapids:
- OS: linux
- CPU architecture: x86_64/intel/sapphirerapids
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-skylake:
- OS: linux
- CPU architecture: x86_64/intel/skylake_avx512
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-cascadelake:
- OS: linux
- CPU architecture: x86_64/intel/cascadelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-icelake:
- OS: linux
- CPU architecture: x86_64/intel/icelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen2:
- OS: linux
- CPU architecture: x86_64/amd/zen2
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen3:
- OS: linux
- CPU architecture: x86_64/amd/zen3
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen4:
- OS: linux
- CPU architecture: x86_64/amd/zen4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-generic:
- OS: linux
- CPU architecture: aarch64/generic
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-neoverse_n1:
- OS: linux
- CPU architecture: aarch64/neoverse_n1
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-neoverse_v1:
- OS: linux
- CPU architecture: aarch64/neoverse_v1
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-graviton4:
- OS: linux
- CPU architecture: aarch64/aws/graviton4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']

eessi-bot-surf · 2026-01-27T15:55:11Z

Instance eessi-bot-surf is configured to build on:

Node type cpu_zen2:
- OS: linux
- CPU architecture: x86_64/amd/zen2
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type cpu_zen4:
- OS: linux
- CPU architecture: x86_64/amd/zen4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type gpu_a100:
- OS: linux
- CPU architecture: x86_64/intel/icelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc80
Node type gpu_h100:
- OS: linux
- CPU architecture: x86_64/amd/zen4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc90

gpu-bot-ugent · 2026-01-27T15:55:11Z

Instance eessi-bot-vsc-ugent is configured to build on:

Node type gpu_a100:
- OS: linux
- CPU architecture: x86_64/amd/zen3
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc80
Node type gpu_v100:
- OS: linux
- CPU architecture: x86_64/intel/cascadelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc70

eessi-bot-jsc · 2026-01-27T15:55:11Z

Instance eessi-bot-jsc is configured to build on:

Node type aarch64-nvidia-grace:
- OS: linux
- CPU architecture: aarch64/nvidia/grace
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-nvidia-gh200:
- OS: linux
- CPU architecture: aarch64/nvidia/grace
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc90

eessi-bot-rug · 2026-01-27T15:55:12Z

Instance eessi-bot-rug is configured to build on:

Node type gpu_a100:
- OS: linux
- CPU architecture: x86_64/intel/icelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc80
Node type gpu_v100:
- OS: linux
- CPU architecture: x86_64/intel/skylake_avx512
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
- Accelerators: nvidia/cc70

laraPPr · 2026-01-29T09:35:45Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_n1

eessi-bot-aws · 2026-01-29T09:35:52Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_n1
Building for: aarch64/neoverse_n1
Job dir: /project/def-users/SHARED/jobs/2026.01/pr_1337/125978

date	job status	comment
Jan 29 09:35:51 UTC 2026	submitted	job id `125978` awaits release by job manager
Jan 29 09:36:26 UTC 2026	released	job awaits launch by Slurm scheduler
Jan 29 09:41:57 UTC 2026	running	job `125978` is running
Jan 29 10:56:40 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-125978.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-neoverse_n1-17696840400.tar.zst` size: 17 MiB (18593995 bytes) entries: 1730 modules under 2025.06/software/linux/aarch64/neoverse_n1/modules/all `archspec/0.2.5-GCCcore-13.3.0.lua` `kim-api/2.4.1-GCC-13.3.0.lua` `MDI/1.4.26-gompi-2024a.lua` `mpi4py/4.0.1-gompi-2024a.lua` `PLUMED/2.9.3-foss-2024a.lua` `tbb/2021.13.0-GCCcore-13.3.0.lua` `Voro++/0.4.6-GCCcore-13.3.0.lua` `xxd/9.1.1275-GCCcore-13.3.0.lua` software under 2025.06/software/linux/aarch64/neoverse_n1/software `archspec/0.2.5-GCCcore-13.3.0` `kim-api/2.4.1-GCC-13.3.0` `MDI/1.4.26-gompi-2024a` `mpi4py/4.0.1-gompi-2024a` `PLUMED/2.9.3-foss-2024a` `tbb/2021.13.0-GCCcore-13.3.0` `Voro++/0.4.6-GCCcore-13.3.0` `xxd/9.1.1275-GCCcore-13.3.0` reprod directories under 2025.06/software/linux/aarch64/neoverse_n1/reprod `archspec/0.2.5-GCCcore-13.3.0/20260129_094212UTC` `kim-api/2.4.1-GCC-13.3.0/20260129_094442UTC` `MDI/1.4.26-gompi-2024a/20260129_094530UTC` `mpi4py/4.0.1-gompi-2024a/20260129_095928UTC` `PLUMED/2.9.3-foss-2024a/20260129_095246UTC` `tbb/2021.13.0-GCCcore-13.3.0/20260129_100318UTC` `Voro++/0.4.6-GCCcore-13.3.0/20260129_094228UTC` `xxd/9.1.1275-GCCcore-13.3.0/20260129_094535UTC` other under 2025.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Jan 29 10:56:40 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64-neoverse_n1+default P: latency: 1.94 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64-neoverse_n1+default P: latency: 5.46 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64-neoverse_n1+default P: latency: 0.3 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64-neoverse_n1+default P: bandwidth: 15890.34 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-125978.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

laraPPr · 2026-01-29T12:59:27Z

@lorisercole It seems like were not gonna be able to run the ctests on ARM or filter out the ones that fail? Or maybe the failed point to deeper problem.

== Running pre-test hook...

  >> running shell command:

        ctest --no-tests=error -LE unstable -E "TestMliapPyUnified|AtomicPairStyle:meam_spline|KSpaceStyle:scafacos.*"

        [started at: 2026-01-29 10:21:35]

        [working dir: /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj]

        [output and state saved to /tmp/eb-tjydbo1e/eb-yb7rpe2x/run-shell-cmd-output/ctest-wphj5hz_]





ERROR: Shell command failed!

    full command              ->  ctest --no-tests=error -LE unstable -E

"TestMliapPyUnified|AtomicPairStyle:meam_spline|KSpaceStyle:scafacos.*"

    exit code                 ->  8

    called from               ->  'test_step' function in

/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/neoverse_n1/sof

tware/EasyBuild/5.2.0/lib/python3.13/site-packages/easybuild/easyblocks/generic/

configuremake.py (line 401)

    working directory         ->

/tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_ob

j

    output (stdout + stderr)  ->

/tmp/eb-tjydbo1e/eb-yb7rpe2x/run-shell-cmd-output/ctest-wphj5hz_/out.txt

    interactive shell script  ->

/tmp/eb-tjydbo1e/eb-yb7rpe2x/run-shell-cmd-output/ctest-wphj5hz_/cmd.sh



== ... (took 31 mins 55 secs)

== FAILED: Installation ended unsuccessfully: shell command 'ctest ...' failed in test step for LAMMPS-29Aug2024_update2-foss-2024a-kokkos.eb (took 50 mins 12 secs)

lorisercole · 2026-01-29T13:31:40Z

@lorisercole It seems like were not gonna be able to run the ctests on ARM or filter out the ones that fail? Or maybe the failed point to deeper problem.

Do you know specifically which ones failed?

laraPPr · 2026-01-29T14:03:48Z

No that is the /tmp. I can test interactively on the magic castle cluster to get the list. If you want we can also give you access to the cluster. Davide already has an account on it. Than you can test on ARM yourself.

laraPPr · 2026-01-29T15:02:24Z

I'll send you the full output via slack

The following tests FAILED:

         45 - KimCommands (Subprocess aborted)

         49 - MPILoadBalancing (Failed)

         57 - LibraryMPI (Failed)

Errors while running CTest

lorisercole · 2026-01-29T15:55:30Z

The MPI ones seem to be due to a MPI configuration problem. The tests apparently require 4 MPI slots, but not enough are available

ocaisa · 2026-01-29T20:18:57Z

Ah, I knew we would hit this at some point, we need to set the environment variables to allow oversubscription for OpenMPI 5

lorisercole · 2026-01-30T18:22:15Z

Actually, as I mentioned to Lara, Davide was able to recover the slurm log file from the bot, and it does not show the two MPI errors (which are due to not-enough MPI slots available, 4 are required as hard-coded in these tests).
The only error is this one:

        Start  45: KimCommands
 45/545 Test  #45: KimCommands ...................................Subprocess aborted***Exception:   4.25 sec
[==========] Running 6 tests from 1 test suite.
[----------] Global test environment set-up.
[----------] 6 tests from KimCommandsTest
[ RUN      ] KimCommandsTest.kim
[       OK ] KimCommandsTest.kim (57 ms)
[ RUN      ] KimCommandsTest.kim_init
[       OK ] KimCommandsTest.kim_init (23 ms)
[ RUN      ] KimCommandsTest.kim_interactions

[ FATAL ] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/_deps/googletest-src/googletest/src/gtest-port.cc:1155:: Only one stdout capturer can exist at a time.
[aarch64-neoverse-n1-node2:128852] *** Process received signal ***
[aarch64-neoverse-n1-node2:128852] Signal: Aborted (6)
[aarch64-neoverse-n1-node2:128852] Signal code:  (-6)
[aarch64-neoverse-n1-node2:128852] [ 0] linux-vdso.so.1(__kernel_rt_sigreturn+0x0) [0x400024bf07a0]
[aarch64-neoverse-n1-node2:128852] [ 1] /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/lib/../lib64/libc.so.6(+0x80988) [0x40002a270988]
[aarch64-neoverse-n1-node2:128852] [ 2] /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/lib/../lib64/libc.so.6(gsignal+0x1c) [0x40002a22600c]
[aarch64-neoverse-n1-node2:128852] [ 3] /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/lib/../lib64/libc.so.6(abort+0x28) [0x40002a2118f4]
[aarch64-neoverse-n1-node2:128852] [ 4] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands() [0x454d54]
[aarch64-neoverse-n1-node2:128852] [ 5] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands() [0x45cce0]
[aarch64-neoverse-n1-node2:128852] [ 6] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN10LAMMPSTest8TearDownEv+0x78) [0x438318]
[aarch64-neoverse-n1-node2:128852] [ 7] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN7testing8internal35HandleExceptionsInMethodIfSupportedINS_4TestEvEET0_PT_MS4_FS3_vEPKc+0x44) [0x480d24]
[aarch64-neoverse-n1-node2:128852] [ 8] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN7testing8TestInfo3RunEv+0x180) [0x46cd28]
[aarch64-neoverse-n1-node2:128852] [ 9] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN7testing9TestSuite3RunEv+0x108) [0x46ce48]
[aarch64-neoverse-n1-node2:128852] [10] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN7testing8internal12UnitTestImpl11RunAllTestsEv+0x31c) [0x4781a4]
[aarch64-neoverse-n1-node2:128852] [11] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_ZN7testing8UnitTest3RunEv+0x6c) [0x46d034]
[aarch64-neoverse-n1-node2:128852] [12] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(main+0x154) [0x42a814]
[aarch64-neoverse-n1-node2:128852] [13] /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/lib/../lib64/libc.so.6(+0x22074) [0x40002a212074]
[aarch64-neoverse-n1-node2:128852] [14] /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/lib/../lib64/libc.so.6(__libc_start_main+0x98) [0x40002a212148]
[aarch64-neoverse-n1-node2:128852] [15] /tmp/bot/easybuild/build/LAMMPS/29Aug2024_update2/foss-2024a-kokkos/easybuild_obj/test_kim_commands(_start+0x30) [0x42b370]
[aarch64-neoverse-n1-node2:128852] *** End of error message ***

Hard to know the reason...

slurm-125978.out.txt

laraPPr · 2026-01-31T10:19:36Z

I think I had at least 4 cores in my allocation but I will have to double check. Because I think I had exact 4 cores and maybe it needs at least 5. Also should we do a check that these are not run when there are to little cores. Or add the --oversubscribe like @ocaisa sugested.
I'll try to get a clearer view on why the KimCommands test is failing next week.

laraPPr · 2026-02-02T09:35:21Z

@lorisercole I double checked and I had exactly 4 cores in my allocation.

{2025.06}[2024a] LAMMPS v29Aug2024_update2

29a28ec

laraPPr added the 2025.06-software.eessi.io 2025.06 version of software.eessi.io label Dec 12, 2025

lorisercole suggested changes Dec 16, 2025

View reviewed changes

easystacks/software.eessi.io/2025.06/eessi-2025.06-eb-5.1.2-2024a.yml Outdated Show resolved Hide resolved

Update easystacks/software.eessi.io/2025.06/eessi-2025.06-eb-5.1.2-20…

8574220

…24a.yml Co-authored-by: Loris Ercole <30901257+lorisercole@users.noreply.github.com>

laraPPr and others added 2 commits January 23, 2026 13:24

Merge branch 'EESSI:main' into LAMMPS

09b4017

use easybuild 5.2.0

db295de

include Easybuild pr #25133

6ca5919

Conversation

laraPPr commented Dec 12, 2025

Uh oh!

laraPPr commented Dec 12, 2025

Uh oh!

eessi-bot-aws bot commented Dec 12, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

Uh oh!

laraPPr commented Dec 16, 2025

Uh oh!

lorisercole commented Jan 14, 2026

Uh oh!

laraPPr commented Jan 27, 2026

Uh oh!

gpu-bot-ugent bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-aws bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-surf bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-deucalion bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-jsc bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-rug bot commented Jan 27, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

laraPPr commented Jan 27, 2026

Uh oh!

eessi-bot-deucalion bot commented Jan 27, 2026

Uh oh!

eessi-bot-aws bot commented Jan 27, 2026

Uh oh!

eessi-bot-surf bot commented Jan 27, 2026

Uh oh!

gpu-bot-ugent bot commented Jan 27, 2026

Uh oh!

eessi-bot-jsc bot commented Jan 27, 2026

Uh oh!

eessi-bot-rug bot commented Jan 27, 2026

Uh oh!

laraPPr commented Jan 29, 2026

Uh oh!

eessi-bot-aws bot commented Jan 29, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

laraPPr commented Jan 29, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

lorisercole commented Jan 29, 2026

Uh oh!

laraPPr commented Jan 29, 2026

Uh oh!

laraPPr commented Jan 29, 2026

Uh oh!

lorisercole commented Jan 29, 2026

Uh oh!

ocaisa commented Jan 29, 2026

Uh oh!

lorisercole commented Jan 30, 2026

Uh oh!

laraPPr commented Jan 31, 2026

Uh oh!

laraPPr commented Feb 2, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

eessi-bot-aws bot commented Dec 12, 2025 •

edited

Loading

gpu-bot-ugent bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-aws bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-surf bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-deucalion bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-jsc bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-rug bot commented Jan 27, 2026 •

edited

Loading

eessi-bot-aws bot commented Jan 29, 2026 •

edited

Loading

laraPPr commented Jan 29, 2026 •

edited

Loading