{2023.06}[2023a] QIIME2 2024.2.0

[PetrKralCZ]

23 out of 234 required modules missing:

* alsa-lib/1.2.9-GCCcore-12.3.0 (alsa-lib-1.2.9-GCCcore-12.3.0.eb)
* Bowtie2/2.5.1-GCC-12.3.0 (Bowtie2-2.5.1-GCC-12.3.0.eb)
* bcrypt/4.0.1-GCCcore-12.3.0 (bcrypt-4.0.1-GCCcore-12.3.0.eb)
* paramiko/3.2.0-GCCcore-12.3.0 (paramiko-3.2.0-GCCcore-12.3.0.eb)
* Parsl/2024.4.22-GCCcore-12.3.0 (Parsl-2024.4.22-GCCcore-12.3.0.eb)
* pigz/2.8-GCCcore-12.3.0 (pigz-2.8-GCCcore-12.3.0.eb)
* FastTree/2.1.11-GCCcore-12.3.0 (FastTree-2.1.11-GCCcore-12.3.0.eb)
* cutadapt/4.9-GCCcore-12.3.0 (cutadapt-4.9-GCCcore-12.3.0.eb)
* VSEARCH/2.25.0-GCC-12.3.0 (VSEARCH-2.25.0-GCC-12.3.0.eb)
* attr/2.5.1-GCCcore-12.3.0 (attr-2.5.1-GCCcore-12.3.0.eb)
* UniFrac/1.4-foss-2023a (UniFrac-1.4-foss-2023a.eb)
* Brotli-python/1.0.9-GCCcore-12.3.0 (Brotli-python-1.0.9-GCCcore-12.3.0.eb)
* coverage/7.2.3-GCCcore-12.3.0 (coverage-7.2.3-GCCcore-12.3.0.eb)
* nose3/1.3.8-GCCcore-12.3.0 (nose3-1.3.8-GCCcore-12.3.0.eb)
* Cython/3.0.7-GCCcore-12.3.0 (Cython-3.0.7-GCCcore-12.3.0.eb)
* psutil/5.9.8-GCCcore-12.3.0 (psutil-5.9.8-GCCcore-12.3.0.eb)
* PyHMMER/0.10.6-gompi-2023a (PyHMMER-0.10.6-gompi-2023a.eb)
* Biopython/1.83-gfbf-2023a (Biopython-1.83-gfbf-2023a.eb)
* BamTools/2.5.2-GCC-12.3.0 (BamTools-2.5.2-GCC-12.3.0.eb)
* BEDTools/2.31.0-GCC-12.3.0 (BEDTools-2.31.0-GCC-12.3.0.eb)
* pybedtools/0.9.1-foss-2023a (pybedtools-0.9.1-foss-2023a.eb)
* gffutils/0.13-foss-2023a (gffutils-0.13-foss-2023a.eb)
* QIIME2/2024.2.0-foss-2023a-amplicon (QIIME2-2024.2.0-foss-2023a-amplicon.eb)

[bedroge]

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1317/107430

date	job status	comment
Nov 24 12:20:21 UTC 2025	submitted	job id 107430 awaits release by job manager
Nov 24 12:20:44 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 24 12:26:32 UTC 2025	running	job 107430 is running
Nov 24 15:11:48 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-107430.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen2-17639968280.tar.zst size: 163 MiB (171572621 bytes) entries: 10859 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all alsa-lib/1.2.9-GCCcore-12.3.0.lua attr/2.5.1-GCCcore-12.3.0.lua BamTools/2.5.2-GCC-12.3.0.lua bcrypt/4.0.1-GCCcore-12.3.0.lua BEDTools/2.31.0-GCC-12.3.0.lua Biopython/1.83-gfbf-2023a.lua Bowtie2/2.5.1-GCC-12.3.0.lua Brotli-python/1.0.9-GCCcore-12.3.0.lua coverage/7.2.3-GCCcore-12.3.0.lua cutadapt/4.9-GCCcore-12.3.0.lua Cython/3.0.7-GCCcore-12.3.0.lua FastTree/2.1.11-GCCcore-12.3.0.lua gffutils/0.13-foss-2023a.lua nose3/1.3.8-GCCcore-12.3.0.lua paramiko/3.2.0-GCCcore-12.3.0.lua Parsl/2024.4.22-GCCcore-12.3.0.lua pigz/2.8-GCCcore-12.3.0.lua psutil/5.9.8-GCCcore-12.3.0.lua pybedtools/0.9.1-foss-2023a.lua PyHMMER/0.10.6-gompi-2023a.lua QIIME2/2024.2.0-foss-2023a-amplicon.lua UniFrac/1.4-foss-2023a.lua VSEARCH/2.25.0-GCC-12.3.0.lua software under 2023.06/software/linux/x86_64/amd/zen2/software alsa-lib/1.2.9-GCCcore-12.3.0 attr/2.5.1-GCCcore-12.3.0 BamTools/2.5.2-GCC-12.3.0 bcrypt/4.0.1-GCCcore-12.3.0 BEDTools/2.31.0-GCC-12.3.0 Biopython/1.83-gfbf-2023a Bowtie2/2.5.1-GCC-12.3.0 Brotli-python/1.0.9-GCCcore-12.3.0 coverage/7.2.3-GCCcore-12.3.0 cutadapt/4.9-GCCcore-12.3.0 Cython/3.0.7-GCCcore-12.3.0 FastTree/2.1.11-GCCcore-12.3.0 gffutils/0.13-foss-2023a nose3/1.3.8-GCCcore-12.3.0 paramiko/3.2.0-GCCcore-12.3.0 Parsl/2024.4.22-GCCcore-12.3.0 pigz/2.8-GCCcore-12.3.0 psutil/5.9.8-GCCcore-12.3.0 pybedtools/0.9.1-foss-2023a PyHMMER/0.10.6-gompi-2023a QIIME2/2024.2.0-foss-2023a-amplicon UniFrac/1.4-foss-2023a VSEARCH/2.25.0-GCC-12.3.0 reprod directories under 2023.06/software/linux/x86_64/amd/zen2/reprod no reprod directories in tarball other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Nov 24 15:11:48 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_amd_zen2+default P: perf: 449.039 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_amd_zen2+default P: perf: 453.954 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.61 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_amd_zen2+default P: latency: 2.66 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_amd_zen2+default P: latency: 5.87 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_amd_zen2+default P: latency: 5.84 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.86 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.82 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 6396.26 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 6438.86 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-107430.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2023.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.11/pr_1317/14247523

date	job status	comment
Nov 24 12:20:39 UTC 2025	submitted	job id 14247523 awaits release by job manager
Nov 24 12:21:03 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 26 13:16:54 UTC 2025	running	job 14247523 is running
Nov 26 13:34:07 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14247523.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-17641634100.tar.gz size: 0 MiB (723428 bytes) entries: 167 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all alsa-lib/1.2.9-GCCcore-12.3.0.lua software under 2023.06/software/linux/aarch64/nvidia/grace/software alsa-lib/1.2.9-GCCcore-12.3.0 reprod directories under 2023.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Nov 26 13:34:07 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/28) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/28) EESSI_LAMMPS_lj %device_type=gpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /1f2ca7c1 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 6977.867 timesteps/s (r:0, l:None, u:None) [ OK ] (10/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1538.154 timesteps/s (r:0, l:None, u:None) [ OK ] (11/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1533.976 timesteps/s (r:0, l:None, u:None) [ OK ] (12/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /b22a48f5 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1554.306 timesteps/s (r:0, l:None, u:None) [ OK ] (13/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.87 us (r:0, l:None, u:None) [ OK ] (14/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.84 us (r:0, l:None, u:None) [ OK ] (15/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.1 us (r:0, l:None, u:None) [ OK ] (16/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.29 us (r:0, l:None, u:None) [ OK ] (17/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.11 us (r:0, l:None, u:None) [ OK ] (18/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.24 us (r:0, l:None, u:None) [ OK ] (19/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.31 us (r:0, l:None, u:None) [ OK ] (20/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.44 us (r:0, l:None, u:None) [ OK ] (21/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.48 us (r:0, l:None, u:None) [ OK ] (22/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.48 us (r:0, l:None, u:None) [ OK ] (23/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (24/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (25/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 40725.37 MB/s (r:0, l:None, u:None) [ OK ] (26/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42102.38 MB/s (r:0, l:None, u:None) [ OK ] (27/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 39134.61 MB/s (r:0, l:None, u:None) [ OK ] (28/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 43216.53 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 20/28 test case(s) from 28 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file slurm-14247523.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

[eessi-bot-deucalion]

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.11/pr_1317/700526

date	job status	comment
Nov 24 13:55:17 UTC 2025	submitted	job id 700526 awaits release by job manager
Nov 24 13:55:55 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 24 13:56:58 UTC 2025	running	job 700526 is running
Nov 24 14:14:50 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-700526.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2023.06-software-linux-aarch64-a64fx-17639932930.tar.zst size: 0 MiB (754534 bytes) entries: 167 modules under 2023.06/software/linux/aarch64/a64fx/modules/all alsa-lib/1.2.9-GCCcore-12.3.0.lua software under 2023.06/software/linux/aarch64/a64fx/software alsa-lib/1.2.9-GCCcore-12.3.0 reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Nov 24 14:14:50 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 580.112 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 580.994 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.65 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.74 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8663.6 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8157.51 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file slurm-700526.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

The Bowtie2 build failed, because it's trying to use SSE on Arm:

sse_wrap.h:116:10: fatal error: simde/x86/sse2.h: No such file or directory
  116 | #include "simde/x86/sse2.h"
      |          ^~~~~~~~~~~~~~~~~~
compilation terminated.

For older versions this was fixed in easybuilders/easybuild-easyconfigs#16946, we have to check if we can still apply the same kind of fix to newer versions.

Edit: according to https://github.com/BenLangmead/bowtie2?tab=readme-ov-file#obtaining-bowtie2, that solution should still work.

[boegel]

@PetrKralCZ Looks like we'll need to include simde as an extra build dependency for QIIME Bowtie2?

builddependencies = [ ... ]
if ARCH == 'aarch64':
    builddependencies.append('simde', '...')

[PetrKralCZ]

@PetrKralCZ Looks like we'll need to include simde as an extra build dependency for QIIME Bowtie2?

builddependencies = [ ... ]
if ARCH == 'aarch64':
    builddependencies.append('simde', '...')

• fix compatibility with Arm for recent Bowtie2 easyconfigs by adding simde header-only build dependency easybuilders/easybuild-easyconfigs#24791

[bedroge]

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.12/pr_1317/14298339

date	job status	comment
Dec 11 12:27:45 UTC 2025	submitted	job id 14298339 awaits release by job manager
Dec 11 12:28:37 UTC 2025	released	job awaits launch by Slurm scheduler
Dec 11 13:23:32 UTC 2025	running	job 14298339 is running
Dec 11 13:26:47 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14298339.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2025.06-software-linux-aarch64-nvidia-grace-17654594770.tar.gz size: 0 MiB (45 bytes) entries: 0 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all no module files in tarball software under 2025.06/software/linux/aarch64/nvidia/grace/software no software packages in tarball reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Dec 11 13:26:47 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 2.48 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.14 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.26 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 23876.77 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-14298339.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

Oops, triggered the build for the wrong EESSI version...

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2023.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.12/pr_1317/14298521

date	job status	comment
Dec 11 13:28:40 UTC 2025	submitted	job id 14298521 awaits release by job manager
Dec 11 13:28:54 UTC 2025	released	job awaits launch by Slurm scheduler
Dec 11 14:35:16 UTC 2025	running	job 14298521 is running
Dec 11 15:05:18 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14298521.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-17654647100.tar.gz size: 18 MiB (19303127 bytes) entries: 3029 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all alsa-lib/1.2.9-GCCcore-12.3.0.lua bcrypt/4.0.1-GCCcore-12.3.0.lua Bowtie2/2.5.1-GCC-12.3.0.lua cutadapt/4.9-GCCcore-12.3.0.lua FastTree/2.1.11-GCCcore-12.3.0.lua paramiko/3.2.0-GCCcore-12.3.0.lua Parsl/2024.4.22-GCCcore-12.3.0.lua pigz/2.8-GCCcore-12.3.0.lua simde/0.8.2-GCCcore-12.3.0.lua VSEARCH/2.25.0-GCC-12.3.0.lua software under 2023.06/software/linux/aarch64/nvidia/grace/software alsa-lib/1.2.9-GCCcore-12.3.0 bcrypt/4.0.1-GCCcore-12.3.0 Bowtie2/2.5.1-GCC-12.3.0 cutadapt/4.9-GCCcore-12.3.0 FastTree/2.1.11-GCCcore-12.3.0 paramiko/3.2.0-GCCcore-12.3.0 Parsl/2024.4.22-GCCcore-12.3.0 pigz/2.8-GCCcore-12.3.0 simde/0.8.2-GCCcore-12.3.0 VSEARCH/2.25.0-GCC-12.3.0 reprod directories under 2023.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Dec 11 15:05:18 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/28) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/28) EESSI_LAMMPS_lj %device_type=gpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /1f2ca7c1 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 7056.921 timesteps/s (r:0, l:None, u:None) [ OK ] (10/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1514.461 timesteps/s (r:0, l:None, u:None) [ OK ] (11/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1520.828 timesteps/s (r:0, l:None, u:None) [ OK ] (12/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /b22a48f5 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1489.617 timesteps/s (r:0, l:None, u:None) [ OK ] (13/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.88 us (r:0, l:None, u:None) [ OK ] (14/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.97 us (r:0, l:None, u:None) [ OK ] (15/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.14 us (r:0, l:None, u:None) [ OK ] (16/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.21 us (r:0, l:None, u:None) [ OK ] (17/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.08 us (r:0, l:None, u:None) [ OK ] (18/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.97 us (r:0, l:None, u:None) [ OK ] (19/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.61 us (r:0, l:None, u:None) [ OK ] (20/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.42 us (r:0, l:None, u:None) [ OK ] (21/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.51 us (r:0, l:None, u:None) [ OK ] (22/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (23/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.52 us (r:0, l:None, u:None) [ OK ] (24/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (25/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 43273.57 MB/s (r:0, l:None, u:None) [ OK ] (26/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 40890.39 MB/s (r:0, l:None, u:None) [ OK ] (27/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41393.62 MB/s (r:0, l:None, u:None) [ OK ] (28/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42090.32 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 20/28 test case(s) from 28 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file slurm-14298521.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[bedroge]

Failure for UniFrac 1.4:

h5c++ -shared -fopenmp -o libssu.so tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -l
c -llz4 -llapacke -lflexiblas -lgfortran -lquadmath -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/nvidia/grace/software/UniFrac/1.4-foss-20
23a/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5
/cvmfs/software.eessi.io/versions/2023.06/compat/linux/aarch64/usr/bin/ld: cannot find -lquadmath: No such file or directory

edit: that's set here: https://github.com/biocore/unifrac-binaries/blob/v1.4/src/Makefile#L47, so we would need to modify that (i.e. adapt the existing patch a bit more: https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/u/UniFrac/UniFrac-1.4_fix-makefiles.patch).