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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 375 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 465 repositories
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 11, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 101 34 20 6 Updated Feb 11, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 11 7 Updated Feb 11, 2026
  • 2026_SEA_AD_Ca_Atlas_Paper_Figure_Reproducibility Public

    Figure Reproducibility Reposityor for 2026 SEA AD Ca Atlas Paper

    AllenInstitute/2026_SEA_AD_Ca_Atlas_Paper_Figure_Reproducibility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 11, 2026
  • SPOCTT Public

    Tools, tutorials, and resources associated with the SPOCTT initiative (Scientific and Public Outreach of Cell Type Taxonomies)

    AllenInstitute/SPOCTT’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 2 0 0 Updated Feb 11, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 274 9 Updated Feb 11, 2026
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 2 1 55 (3 issues need help) 0 Updated Feb 10, 2026
  • openscope_upload Public

    Code to process and then upload openscope files to code ocean

    AllenInstitute/openscope_upload’s past year of commit activity
    Python 1 0 1 1 Updated Feb 10, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 1 3 0 Updated Feb 10, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 91 3 Updated Feb 10, 2026
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