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<!DOCTYPE html>
<html lang="en">
<head>
<script async src="https://www.googletagmanager.com/gtag/js?id=G-BLMNF9GW4P"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-BLMNF9GW4P');
</script>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>ProtoMech - Circuit tracing for proteins</title>
<link rel="icon" type="image/png" sizes="32x32" href="img/favicon.png">
<link rel="apple-touch-icon" sizes="180x180" href="img/favicon.png">
<meta name="theme-color" content="#ffffff">
<link rel="stylesheet" href="css/styles.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.5.1/css/all.min.css">
<script src="https://unpkg.com/lucide@latest"></script>
</head>
<body>
<!-- File Upload Dropzone -->
<div id="upload-screen" class="hidden">
<div id="dropzone">
<div class="dropzone-icon">📁</div>
<h2>Drop Files Here</h2>
<p class="dropzone-subtitle">or click to select files</p>
<input type="file" id="file-input" multiple accept=".json,.txt" />
<div class="required-files">
<p>Required files:</p>
<div class="file-status" id="status-activation">
<span class="status-icon">○</span>
<span class="file-name">activation_indices.json</span>
</div>
<div class="file-status" id="status-seq">
<span class="status-icon">○</span>
<span class="file-name">seq.txt</span>
</div>
<div class="file-status" id="status-top">
<span class="status-icon">○</span>
<span class="file-name">top_activations.json</span>
</div>
<div class="file-status" id="status-virtual">
<span class="status-icon">○</span>
<span class="file-name">virtual_weights.json</span>
</div>
</div>
<button id="btn-load" disabled><i data-lucide="upload"></i> Load Data</button>
</div>
</div>
<div id="app">
<!-- Example Selector -->
<div id="example-selector">
<img src="img/logo.png" alt="Protein Circuit Tracing" id="site-logo">
<select id="model-dropdown"></select>
<select id="example-dropdown">
<option value="">Loading examples...</option>
</select>
<button id="btn-load-custom"><i data-lucide="folder-open"></i> Load Custom Circuit</button>
<button id="btn-virtual-weights" disabled><span class="btn-icon">👁</span> Show virtual weights</button>
<button id="btn-settings" title="Settings"><i data-lucide="settings"></i></button>
<div id="selector-actions">
<button id="btn-arxiv" title="arXiv Paper">
<svg viewBox="0 0 24 24" width="20" height="20" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round">
<path d="M4 19.5v-15A2.5 2.5 0 0 1 6.5 2H20v20H6.5a2.5 2.5 0 0 1 0-5H20"/>
<path d="M9 10l2 2 4-4"/>
</svg>
Paper
</button>
<button id="btn-guide" title="Video Guide">
<i data-lucide="circle-help"></i>
Guide
</button>
<button id="btn-github" title="GitHub Code">
<i class="fa-brands fa-github"></i>
Code
</button>
</div>
</div>
<!-- Activation Detail Panel (hidden by default) -->
<div id="activation-panel" class="hidden">
<div id="activation-panel-header">
<h2 id="panel-title">Latent Activations</h2>
<button id="panel-close" aria-label="Close panel"><i data-lucide="x"></i></button>
</div>
<div id="activation-panel-content"></div>
</div>
<!-- Layer Panel (hidden by default) -->
<div id="layer-panel" class="hidden">
<div id="layer-panel-header">
<h2 id="layer-panel-title">Layer Latent Rankings</h2>
<button id="layer-panel-close" aria-label="Close panel"><i data-lucide="x"></i></button>
</div>
<div id="layer-panel-content"></div>
</div>
<!-- Color Legend -->
<div id="color-legend" style="display: none;">
<span class="legend-label">Activation:</span>
<div class="legend-gradient"></div>
<span class="legend-min">Low</span>
<span class="legend-max">High</span>
</div>
<!-- Grid Section -->
<div id="grid-container">
<div id="layer-labels"></div>
<div id="grid-body"></div>
<svg id="grid-edges-svg"></svg>
</div>
<!-- Sequence Bar -->
<div id="sequence-bar">
<div id="sequence-content"></div>
</div>
<!-- Canvas Section -->
<div id="canvas-section">
<div id="canvas-toolbar">
<button id="btn-delete"><i data-lucide="trash-2"></i> Delete</button>
<button id="btn-save-canvas"><i data-lucide="save"></i> Save</button>
<button id="btn-load-canvas"><i data-lucide="folder-open"></i> Load</button>
<input type="file" id="canvas-file-input" accept=".json" style="display: none;" />
<button id="btn-save-svg"><i data-lucide="image-down"></i> Save Canvas as Image</button>
<button id="btn-fullscreen"><i data-lucide="maximize"></i> Fullscreen</button>
</div>
<div id="canvas-container">
<svg id="edges-svg"></svg>
<div id="nodes-container"></div>
</div>
</div>
</div>
<!-- Context Menu -->
<div id="context-menu" class="context-menu hidden">
<div class="context-menu-item" data-action="add-to-canvas">Add Node to Canvas</div>
<div class="context-menu-item" data-action="add-name">Add Name</div>
<div class="context-menu-item" data-action="delete">Delete</div>
<div class="context-menu-item" data-action="show-info">Show Latent Information</div>
</div>
<!-- Video Guide Popup -->
<div id="video-popup" class="video-popup hidden">
<div class="video-popup-content">
<button id="video-popup-close" aria-label="Close"><i data-lucide="x"></i></button>
<div class="video-container">
<iframe id="video-iframe" src="" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
</div>
<p class="video-colab-text">To generate the JSON files required for a new sequence, use this <a href="https://colab.research.google.com/github/amirgroup-codes/ProtoMech/blob/main/ProtoMech.ipynb" target="_blank" rel="noopener noreferrer">Google Colab Notebook</a>.</p>
</div>
</div>
<!-- Name Input Popup -->
<div id="name-popup" class="name-popup hidden">
<div class="name-popup-content">
<h3>Add Node Name</h3>
<input type="text" id="node-name-input" placeholder="Enter name...">
<div class="name-popup-buttons">
<button id="name-popup-cancel"><i data-lucide="x"></i> Cancel</button>
<button id="name-popup-save"><i data-lucide="check"></i> Save</button>
</div>
</div>
</div>
<!-- Settings Popup -->
<div id="settings-popup" class="hidden">
<div id="settings-popup-content">
<div id="settings-popup-header">
<h3>Settings</h3>
<button id="settings-popup-close">×</button>
</div>
<div id="offset-control">
<label for="offset-input" class="filter-label">Offset (optional):</label>
<input type="number" id="offset-input" min="0" value="0" placeholder="0" />
</div>
<div id="edge-filter-control">
<span class="filter-label">Filter Virtual Weights:</span>
<input type="range" id="edge-threshold-slider" min="0.01" max="100" step="0.01" value="10" />
<input type="number" id="edge-threshold-input" min="0.01" max="100" step="0.01" value="10" />
<span class="percent-sign">%</span>
</div>
</div>
</div>
<!-- Loading Overlay -->
<div id="loading-overlay" class="hidden">
<div class="loading-spinner"></div>
</div>
<script src="js/app.js"></script>
<script>lucide.createIcons();</script>
</body>
</html>