error when running iscmeb_run() or RunHarmonyLouvain()

[SiaGuo]

I've ran the function, FAST(), to integrate 4 samples. But when I tried to run iscmeb_run() or RunHarmonyLouvain(), I got the error like,
Fit SC-MEB2...
Finish variable initialization
K = 10, iter = 2, loglik= -289562.512426, dloglik=0.999865
Error: matrix multiplication: incompatible matrix dimensions: 2213x15 and 0x0,
or the error like,
******Use Harmony to remove batch in the embeddings from FAST...
Error: element-wise multiplication: incompatible matrix dimensions: 100x4 and 100x1.

I wonder what's wrong with this, cause I've ran on another datasets and it worked well. So anyone has some ideas? Thank you!

[feiyoung]

You can enhance the quality control to prevent outliers from occurring when utilizing the CreatePRECASTObject function by adjusting the following arguments to higher values: premin.spots, premin.features, postmin.spots, and postmin.features.

[SiaGuo]

Thanks for your reply, I will try and let you know the results.

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________________________________ 发件人: ***@***.*** ***@***.***> 代表 Wei Liu ***@***.***> 发送时间: 2024年7月13日 07:56 收件人: feiyoung/ProFAST ***@***.***> 抄送: SiaGuo ***@***.***>; Author ***@***.***> 主题: Re: [feiyoung/ProFAST] error when running iscmeb_run() or RunHarmonyLouvain() (Issue #4) You can enhance the quality control to prevent outliers from occurring when utilizing the CreatePRECASTObject function by adjusting the following arguments to higher values: premin.spots, premin.features, postmin.spots, and postmin.features. ― Reply to this email directly, view it on GitHub<#4 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AWIYTUIYWAH4YJ2GVXZZNTTZMBUKTAVCNFSM6AAAAABKWZF226VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMRWGU2DGNZQGY>. You are receiving this because you authored the thread.Message ID: ***@***.***>