diff --git a/bio-research/.mcp.json b/bio-research/.mcp.json index 88a96b16..3fe0c824 100644 --- a/bio-research/.mcp.json +++ b/bio-research/.mcp.json @@ -12,6 +12,10 @@ "type": "http", "url": "https://mcp.deepsense.ai/biorxiv/mcp" }, + "bgpt": { + "type": "sse", + "url": "https://bgpt.pro/mcp/sse" + }, "c-trials": { "type": "http", "url": "https://mcp.deepsense.ai/clinical_trials/mcp" diff --git a/bio-research/CONNECTORS.md b/bio-research/CONNECTORS.md index 7c2eb754..3c0c06bc 100644 --- a/bio-research/CONNECTORS.md +++ b/bio-research/CONNECTORS.md @@ -10,7 +10,7 @@ Plugins are **tool-agnostic** — they describe workflows in terms of categories | Category | Placeholder | Included servers | Other options | |----------|-------------|-----------------|---------------| -| Literature | `~~literature` | PubMed, bioRxiv | Google Scholar, Semantic Scholar | +| Literature | `~~literature` | PubMed, bioRxiv, BGPT | Google Scholar, Semantic Scholar | | Scientific illustration | `~~scientific illustration` | BioRender | — | | Clinical trials | `~~clinical trials` | ClinicalTrials.gov | EU Clinical Trials Register | | Chemical database | `~~chemical database` | ChEMBL | PubChem, DrugBank | @@ -21,3 +21,7 @@ Plugins are **tool-agnostic** — they describe workflows in terms of categories | Lab platform | `~~lab platform` | Benchling\* | — | \* Placeholder — MCP URL not yet configured + +## Notes + +- **BGPT** uses SSE transport (`"type": "sse"`) rather than streamable HTTP. It provides structured experimental data extracted from full-text papers, including methods, results, sample sizes, quality scores, and conclusions — complementing PubMed and bioRxiv's standard metadata. Free tier: 50 searches per network, no API key required. See [bgpt.pro/mcp](https://bgpt.pro/mcp) or [github.com/connerlambden/bgpt-mcp](https://github.com/connerlambden/bgpt-mcp). diff --git a/bio-research/README.md b/bio-research/README.md index 58dd0750..9229ac8d 100644 --- a/bio-research/README.md +++ b/bio-research/README.md @@ -2,7 +2,7 @@ Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D. Use with [Cowork](https://claude.com/product/cowork) or install directly in Claude Code. -This plugin consolidates 10 MCP server integrations and 5 analysis skills into a single package for life science researchers. +This plugin consolidates 11 MCP server integrations and 5 analysis skills into a single package for life science researchers. ## What's Included @@ -14,6 +14,7 @@ This plugin consolidates 10 MCP server integrations and 5 analysis skills into a |----------|-------------|---------------------| | U.S. National Library of Medicine | Search biomedical literature and research articles | `~~literature` | | deepsense.ai | Access preprints from bioRxiv and medRxiv | `~~literature` | +| BGPT | Search scientific papers for structured experimental data (methods, results, quality scores) | `~~literature` | | John Wiley & Sons | Access academic research and publications | `~~journal access` | | Sage Bionetworks | Collaborative research data management | `~~data repository` | | deepsense.ai | Bioactive drug-like compound database | `~~chemical database` | diff --git a/bio-research/commands/start.md b/bio-research/commands/start.md index d180433a..2a6c7bce 100644 --- a/bio-research/commands/start.md +++ b/bio-research/commands/start.md @@ -27,6 +27,7 @@ Test which MCP servers are connected by listing available tools. Group the resul **Literature & Data Sources:** - ~~literature database — biomedical literature search - ~~literature database — preprint access (biology and medicine) +- ~~literature database — structured experimental data from full-text papers (BGPT) - ~~journal access — academic publications - ~~data repository — collaborative research data (Sage Bionetworks)