Scripts names make reference to the terminology used in the paper. The code for each analysis and figure is separated in folders. Each Analysis is divided in either "input" and "output", or numerated by the order to run the scripts "Step1...Stepn" Specific code for figures in the paper can be found in the Figure directory.
calculate_PHS_GW.pl : Script to calculate pairwise haplotype sharing by comparing to genome-wide similarity between samples. This was kindly shared by Shichen Wang (shichen.wang@gmail.com).
For questions about any piece of code please contact the author:
A. Poets - agonzale@umn.edu T. Kono - konox006@umn.edu Z. Fang - fang0157@umn.edu