pyproject.toml

[build-system]
requires = ["setuptools>=77.0.3", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "colonyquant"
version = "0.1.0"
description = "Automated pipeline for quantitative analysis of Alkaline Phosphatase (AP) staining and colony morphology in stem-cell assays."
readme = "README.md"
requires-python = ">=3.9"
authors = [
    { name="Benjamin Kidder", email="benjamin.kidder@wayne.edu" },
]
license = { text = "Academic and non-commercial use only; commercial use requires a separate license (see LICENSE file)" }
dependencies = [
    "opencv-python",
    "numpy",
    "pandas",
    "matplotlib",
    "scipy",
    "scikit-learn",
]

[project.scripts]
colonyquant = "colonyquant.cli:main"
colonyquant-prcurve = "colonyquant.cli:generate_pr_curve"
colonyquant-visualize = "colonyquant.cli:visualize_colonies"

[project.urls]
Homepage = "https://github.com/KidderLab/colonyquant"
Repository = "https://github.com/KidderLab/colonyquant"