pspecterlib/DESCRIPTION at main · EMSL-Computing/pspecterlib · GitHub

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Package: pspecterlib
Type: Package
Title: PSpecteR Library - Visualization tools for top-down and bottom-up proteomics data
Version: 1.1.0
Date: 2023-04-13
Authors@R: c(person("David", "Degnan", email = "david.degnan@pnnl.gov", role = c("aut", "cre")))
Description: Provides functionality to visually examine LC-MS top-down and bottom-up proteomics data. Supports reading various mass spectrometry files, labeling spectra with fragmenetation patterns, testing post-translational modifications, plotting where identified fragments map to reference sequences, and visualizing algorithmic output from database search tools (MSPathFinder) and metadata.
License: MIT + file LICENSE
Depends: R (>= 4.1.0)
LazyData: TRUE
URL: https://github.com/emsl-computing/pspecter-lib
BugReports: https://github.com/emsl-computing/pspecter-lib/issues
VignetteBuilder: knitr
biocViews:
Imports:
    rhdf5,
    mzR,
    MSnbase,
    lsa,
    seqinr,
    dplyr,
    reshape2,
    gtools,
    readxl,
    data.table,
    plotly,
    ggplot2,
    magrittr,
    purrr,
    tidyr,
    htmltools,
    RColorBrewer,
    isopat,
    CHNOSZ
Suggests:
    rmarkdown,
    knitr
Remotes:
    fgcz/rawrr
RoxygenNote: 7.2.3
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2022-08-04 19:39:08 UTC
Author: David Degnan [aut, cre]
Maintainer: David Degnan <david.degnan@pnnl.gov>